Comparative Proteomic Analysis of Adhesion/Invasion Related Proteins in Cronobacter sakazakii Based on Data-Independent Acquisition Coupled With LC-MS/MS.
Identifieur interne : 000155 ( Main/Exploration ); précédent : 000154; suivant : 000156Comparative Proteomic Analysis of Adhesion/Invasion Related Proteins in Cronobacter sakazakii Based on Data-Independent Acquisition Coupled With LC-MS/MS.
Auteurs : Ping Li [République populaire de Chine] ; Xuan Dong [République populaire de Chine] ; Xiao-Yi Wang [République populaire de Chine] ; Ting Du [République populaire de Chine] ; Xin-Jun Du [République populaire de Chine] ; Shuo Wang [République populaire de Chine]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2020.
Abstract
Cronobacter sakazakii is foodborne pathogen that causes serious illnesses such as necrotizing enterocolitis, meningitis and septicemia in infants. However, the virulence determinants and mechanisms of pathogenicity of these species remain unclear. In this study, multilocus sequence typing (MLST) was performed on 34 C. sakazakii strains and two strains with the same sequence type (ST) but distinct adhesion/invasion capabilities were selected for identification of differentially expressed proteins using data-independent acquisition (DIA) proteomic analysis. A total of 2,203 proteins were identified and quantified. Among these proteins, 210 exhibited differential expression patterns with abundance ratios ≥3 or ≤0.33 and P values ≤0.05. Among these 210 proteins, 67 were expressed higher, and 143 were expressed lower in C. sakazakii SAKA80220 (strongly adhesive/invasive strain) compared with C. sakazakii SAKA80221 (weakly adhesive/invasive strain). Based on a detailed analysis of the differentially expressed proteins, the highly expressed genes involved in flagellar assembly, lipopolysaccharide synthesis, LuxS/AI-2, energy metabolic pathways and iron-sulfur cluster may be associated with the adhesion/invasion capability of C. sakazakii. To verify the accuracy of the proteomic results, real-time qPCR was used to analyze the expression patterns of some genes at the transcriptional level, and consistent results were observed. This study, for the first time, used DIA proteomic to investigate potential adhesion/invasion related factors as a useful reference for further studies on the pathogenic mechanism of C. sakazakii.
DOI: 10.3389/fmicb.2020.01239
PubMed: 32582128
PubMed Central: PMC7296052
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LC-MS/MS.</title><author><name sortKey="Li, Ping" sort="Li, Ping" uniqKey="Li P" first="Ping" last="Li">Ping Li</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation></author><author><name sortKey="Dong, Xuan" sort="Dong, Xuan" uniqKey="Dong X" first="Xuan" last="Dong">Xuan Dong</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Xiao Yi" sort="Wang, Xiao Yi" uniqKey="Wang X" first="Xiao-Yi" last="Wang">Xiao-Yi Wang</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation></author><author><name sortKey="Du, Ting" sort="Du, Ting" uniqKey="Du T" first="Ting" last="Du">Ting Du</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation></author><author><name sortKey="Du, Xin Jun" sort="Du, Xin Jun" uniqKey="Du X" first="Xin-Jun" last="Du">Xin-Jun Du</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Shuo" sort="Wang, Shuo" uniqKey="Wang S" first="Shuo" last="Wang">Shuo Wang</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Tianjin Key Laboratory of Food Science and Health, School of Medicine, Nankai University, Tianjin, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Tianjin Key Laboratory of Food Science and Health, School of Medicine, Nankai University, Tianjin</wicri:regionArea><placeName><settlement type="city">Tianjin</settlement></placeName></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Cronobacter sakazakii</i> is foodborne pathogen that causes serious illnesses such as necrotizing enterocolitis, meningitis and septicemia in infants. However, the virulence determinants and mechanisms of pathogenicity of these species remain unclear. In this study, multilocus sequence typing (MLST) was performed on 34 <i>C. sakazakii</i> strains and two strains with the same sequence type (ST) but distinct adhesion/invasion capabilities were selected for identification of differentially expressed proteins using data-independent acquisition (DIA) proteomic analysis. A total of 2,203 proteins were identified and quantified. Among these proteins, 210 exhibited differential expression patterns with abundance ratios ≥3 or ≤0.33 and <i>P</i> values ≤0.05. Among these 210 proteins, 67 were expressed higher, and 143 were expressed lower in <i>C. sakazakii</i> SAKA80220 (strongly adhesive/invasive strain) compared with <i>C. sakazakii</i> SAKA80221 (weakly adhesive/invasive strain). Based on a detailed analysis of the differentially expressed proteins, the highly expressed genes involved in flagellar assembly, lipopolysaccharide synthesis, LuxS/AI-2, energy metabolic pathways and iron-sulfur cluster may be associated with the adhesion/invasion capability of <i>C. sakazakii</i>. To verify the accuracy of the proteomic results, real-time qPCR was used to analyze the expression patterns of some genes at the transcriptional level, and consistent results were observed. This study, for the first time, used DIA proteomic to investigate potential adhesion/invasion related factors as a useful reference for further studies on the pathogenic mechanism of <i>C. sakazakii</i>.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32582128</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Comparative Proteomic Analysis of Adhesion/Invasion Related Proteins in <i>Cronobacter sakazakii</i> Based on Data-Independent Acquisition Coupled With LC-MS/MS.</ArticleTitle><Pagination><MedlinePgn>1239</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2020.01239</ELocationID><Abstract><AbstractText><i>Cronobacter sakazakii</i> is foodborne pathogen that causes serious illnesses such as necrotizing enterocolitis, meningitis and septicemia in infants. However, the virulence determinants and mechanisms of pathogenicity of these species remain unclear. In this study, multilocus sequence typing (MLST) was performed on 34 <i>C. sakazakii</i> strains and two strains with the same sequence type (ST) but distinct adhesion/invasion capabilities were selected for identification of differentially expressed proteins using data-independent acquisition (DIA) proteomic analysis. A total of 2,203 proteins were identified and quantified. Among these proteins, 210 exhibited differential expression patterns with abundance ratios ≥3 or ≤0.33 and <i>P</i> values ≤0.05. Among these 210 proteins, 67 were expressed higher, and 143 were expressed lower in <i>C. sakazakii</i> SAKA80220 (strongly adhesive/invasive strain) compared with <i>C. sakazakii</i> SAKA80221 (weakly adhesive/invasive strain). Based on a detailed analysis of the differentially expressed proteins, the highly expressed genes involved in flagellar assembly, lipopolysaccharide synthesis, LuxS/AI-2, energy metabolic pathways and iron-sulfur cluster may be associated with the adhesion/invasion capability of <i>C. sakazakii</i>. To verify the accuracy of the proteomic results, real-time qPCR was used to analyze the expression patterns of some genes at the transcriptional level, and consistent results were observed. This study, for the first time, used DIA proteomic to investigate potential adhesion/invasion related factors as a useful reference for further studies on the pathogenic mechanism of <i>C. sakazakii</i>.</AbstractText><CopyrightInformation>Copyright © 2020 Li, Dong, Wang, Du, Du and Wang.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Ping</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dong</LastName><ForeName>Xuan</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Xiao-Yi</ForeName><Initials>XY</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Du</LastName><ForeName>Ting</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Du</LastName><ForeName>Xin-Jun</ForeName><Initials>XJ</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Shuo</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Food Nutrition and Safety, Tianjin University of Science and Technology, Tianjin, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Tianjin Key Laboratory of Food Science and Health, School of Medicine, Nankai University, Tianjin, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>09</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">C. sakazakii</Keyword><Keyword MajorTopicYN="N">DIA proteomic</Keyword><Keyword MajorTopicYN="N">adhesion/invasion capability</Keyword><Keyword MajorTopicYN="N">real-time qPCR</Keyword><Keyword MajorTopicYN="N">sequence type</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>02</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>05</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>6</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>6</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>6</Month><Day>26</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32582128</ArticleId><ArticleId IdType="doi">10.3389/fmicb.2020.01239</ArticleId><ArticleId IdType="pmc">PMC7296052</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Curr Microbiol. 2014 Oct;69(4):574-9</Citation><ArticleIdList><ArticleId 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Chine</li></country><settlement><li>Tianjin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Ping" sort="Li, Ping" uniqKey="Li P" first="Ping" last="Li">Ping Li</name></noRegion><name sortKey="Dong, Xuan" sort="Dong, Xuan" uniqKey="Dong X" first="Xuan" last="Dong">Xuan Dong</name><name sortKey="Du, Ting" sort="Du, Ting" uniqKey="Du T" first="Ting" last="Du">Ting Du</name><name sortKey="Du, Xin Jun" sort="Du, Xin Jun" uniqKey="Du X" first="Xin-Jun" last="Du">Xin-Jun Du</name><name sortKey="Wang, Shuo" sort="Wang, Shuo" uniqKey="Wang S" first="Shuo" last="Wang">Shuo Wang</name><name sortKey="Wang, Shuo" sort="Wang, Shuo" uniqKey="Wang S" first="Shuo" last="Wang">Shuo Wang</name><name sortKey="Wang, Xiao Yi" sort="Wang, Xiao Yi" uniqKey="Wang X" first="Xiao-Yi" last="Wang">Xiao-Yi Wang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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